Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web. Learn more...
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T.
Genome Research 2003 Nov; 13(11):2498-504
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Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
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